ModeScore as a software is a suite of programs devoted to the
investigation and interpretation of expression data and the
semi-automatic generation of result reports. It includes the
implementation of the ModeScore method and several other methods. The
software is intertwined with the FASIMU software: flux-balance mode
computations can be called with ModeScore functions, and the
calculation of mode scores (where the method got its name from) is a
Apart from ModeScore, the suite contains the programs:
- generates the diffbar diagrams, a bar chart
type which displays relative changes (red of blue to indicate up- and down-regulation), absolute expression levels, error bars and t-test significances.
- Sort genes by their amplitude change or significance level, depending on classes
- expression histograms
Currently, there is no concise and complete manual available, and the
application is only possible with the interaction with the author.